ADAM - ADAM: Activity and Diversity Analysis Module
ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).
Last updated 24 days ago
genesetenrichmentpathwayskegggeneexpressionmicroarray
3.78 score 1 packages 6 scripts 458 downloadsADAMgui - Activity and Diversity Analysis Module Graphical User Interface
ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.
Last updated 24 days ago
genesetenrichmentpathwayskegg
3.30 score 1 scripts 361 downloadslevi - Landscape Expression Visualization Interface
The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.
Last updated 24 days ago
geneexpressionsequencingnetworksoftware
3.30 score 4 scripts 136 downloads